MetaCyc Pathway: superpathway of histidine, purine, and pyrimidine biosynthesis in Rhodosporidium toruloides IFO0880

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Carbamoyl-phosphate synthase (glutamine-hydrolyzing):
L-glutamine + hydrogencarbonate + 2 ATP + H2O→carbamoyl phosphate + 2 ADP + L-glutamate + 2 H+ + phosphate (EC 6.3.5.5)
mRNA_3934 (12302)
mRNA_4929 (13297)
mRNA_8313 (16681)
Ribose-phosphate diphosphokinase:
D-ribose 5-phosphate + ATP→5-phospho-α-D-ribose 1-diphosphate + AMP + H+ (EC 2.7.6.1)
mRNA_2777 (11145)
mRNA_8224 (16592)
Aspartate carbamoyltransferase:
carbamoyl phosphate + L-aspartate→N-carbamoyl-L-aspartate + H+ + phosphate (EC 2.1.3.2)
mRNA_8313 (16681)
ATP phosphoribosyltransferase (in reverse):
5-phospho-α-D-ribose 1-diphosphate + ATP→1-(5-phospho-β-D-ribosyl)-ATP + diphosphate (EC 2.4.2.17)
mRNA_1520 (9888)
Amidophosphoribosyltransferase (in reverse):
5-phospho-α-D-ribose 1-diphosphate + L-glutamine + H2O→5-phospho-β-D-ribosylamine + L-glutamate + diphosphate (EC 2.4.2.14)
mRNA_6932 (15300)
Dihydroorotase (in reverse):
N-carbamoyl-L-aspartate + H+→(S)-dihydroorotate + H2O (EC 3.5.2.3)
mRNA_3923 (12291)
mRNA_8313 (16681)
Phosphoribosylamine--glycine ligase:
5-phospho-β-D-ribosylamine + ATP + glycine→N1-(5-phospho-β-D-ribosyl)glycinamide + ADP + H+ + phosphate (EC 6.3.4.13)
mRNA_5891 (14259)
Phosphoribosyl-ATP diphosphatase:
1-(5-phospho-β-D-ribosyl)-ATP + H2O→1-(5-phospho-β-D-ribosyl)-AMP + diphosphate + H+ (EC 3.6.1.31)
mRNA_3278 (11646)
Dihydroorotate dehydrogenase:
(S)-dihydroorotate[in] + an electron-transfer quinone→orotate[in] + an electron-transfer quinol (EC 1.3.5.2)
No genes
N1-(5-phospho-β-D-ribosyl)glycinamide + ATP + formate→N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide + ADP + H+ + phosphate (EC 6.3.1.21)
No genes
Phosphoribosyl-AMP cyclohydrolase:
1-(5-phospho-β-D-ribosyl)-AMP + H2O→1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide (EC 3.5.4.19)
No genes
Phosphoribosylformylglycinamidine synthase:
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide + L-glutamine + ATP + H2O→2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine + ADP + L-glutamate + H+ + phosphate (EC 6.3.5.3)
mRNA_6665 (15033)
Orotate phosphoribosyltransferase (in reverse):
orotate + 5-phospho-α-D-ribose 1-diphosphate→orotidine 5'-phosphate + diphosphate (EC 2.4.2.10)
mRNA_2348 (10716)
isomerase:
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide→phosphoribulosylformimino-AICAR-phosphate (EC 5.3.1.16)
mRNA_3242 (11610)
Phosphoribosylformylglycinamidine cyclo-ligase:
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine + ATP→5-amino-1-(5-phospho-β-D-ribosyl)imidazole + ADP + H+ + phosphate (EC 6.3.3.1)
mRNA_5891 (14259)
phosphoribulosylformimino-AICAR-phosphate + L-glutamine→5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)-glycerol 3-phosphate + L-glutamate + H+ (EC 4.3.2.10)
mRNA_716 (9084)
Orotidine-5'-phosphate decarboxylase:
orotidine 5'-phosphate + H+→UMP + CO2 (EC 4.1.1.23)
mRNA_3750 (12118)
Imidazoleglycerol-phosphate dehydratase:
D-erythro-1-(imidazol-4-yl)-glycerol 3-phosphate→3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O (EC 4.2.1.19)
mRNA_339 (8707)
Cytidylate kinase:
UMP + ATP→UDP + ADP (EC 2.7.4.14; 2.7.4.22)
No genes
5-(carboxyamino)imidazole ribonucleotide synthase:
5-amino-1-(5-phospho-β-D-ribosyl)imidazole + hydrogencarbonate + ATP→N5-carboxyaminoimidazole ribonucleotide + ADP + 2 H+ + phosphate (EC 6.3.4.18)
No genes
Histidinol-phosphate transaminase (in reverse):
3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate→L-histidinol phosphate + 2-oxoglutarate (EC 2.6.1.9)
mRNA_4862 (13230)
5-(carboxyamino)imidazole ribonucleotide mutase:
N5-carboxyaminoimidazole ribonucleotide→5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate (EC 5.4.99.18)
No genes
Nucleoside-diphosphate kinase:
UDP + ATP→UTP + ADP (EC 2.7.4.6)
mRNA_7311 (15679)
mRNA_575 (8943)
CTP synthase:
UTP + L-glutamine + ATP + H2O→CTP + ADP + L-glutamate + 2 H+ + phosphate (EC 6.3.4.2)
mRNA_8107 (16475)
Histidinol-phosphatase:
L-histidinol phosphate + H2O→histidinol + phosphate (EC 3.1.3.15)
mRNA_1838 (10206)
Phosphoribosylaminoimidazolesuccinocarboxamide synthase:
L-aspartate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + ATP→5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole + ADP + H+ + phosphate (EC 6.3.2.6)
mRNA_852 (9220)
Adenylosuccinate lyase:
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole→5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide + fumarate (EC 4.3.2.2)
mRNA_7437 (15805)
Histidinol dehydrogenase:
histidinol + NAD+→histidinal + NADH + H+ (EC 1.1.1.23)
mRNA_3278 (11646)
Phosphoribosylaminoimidazolecarboxamide formyltransferase:
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide + an N10-formyltetrahydrofolate→5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide + a tetrahydrofolate (EC 2.1.2.3)
mRNA_4053 (12421)
Histidinol dehydrogenase:
histidinal + NAD+ + H2O→L-histidine + NADH + 2 H+ (EC 1.1.1.23)
mRNA_3278 (11646)
IMP cyclohydrolase (in reverse):
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide→IMP + H2O (EC 3.5.4.10)
mRNA_4053 (12421)
Adenylosuccinate synthase:
IMP + L-aspartate + GTP→adenylo-succinate + GDP + 2 H+ + phosphate (EC 6.3.4.4)
mRNA_3802 (12170)
IMP dehydrogenase:
IMP + NAD+ + H2O→XMP + NADH + H+ (EC 1.1.1.205)
mRNA_27 (8395)
Adenylosuccinate lyase:
adenylo-succinate→AMP + fumarate (EC 4.3.2.2)
mRNA_7437 (15805)
GMP synthase (glutamine-hydrolyzing):
XMP + L-glutamine + ATP + H2O→GMP + AMP + L-glutamate + diphosphate + 2 H+ (EC 6.3.5.2)
mRNA_7388 (15756)
Adenylate kinase:
AMP + ATP→2 ADP (EC 2.7.4.3)
mRNA_3932 (12300)
mRNA_4072 (12440)
mRNA_4822 (13190)
mRNA_5739 (14107)
mRNA_6761 (15129)
mRNA_7128 (15496)
mRNA_7396 (15764)
mRNA_1365 (9733)
Guanylate kinase:
GMP + ATP→GDP + ADP (EC 2.7.4.8)
mRNA_3157 (11525)
Ribonucleoside-diphosphate reductase (in reverse):
ADP + a reduced thioredoxin→dADP + an oxidized thioredoxin + H2O (EC 1.17.4.1)
mRNA_2804 (11172)
mRNA_2922 (11290)
mRNA_5869 (14237)
Nucleoside-diphosphate kinase:
GDP + ATP→GTP + ADP (EC 2.7.4.6)
mRNA_7311 (15679)
mRNA_575 (8943)
Ribonucleoside-diphosphate reductase (in reverse):
GDP + a reduced thioredoxin→dGDP + an oxidized thioredoxin + H2O (EC 1.17.4.1)
mRNA_2804 (11172)
mRNA_2922 (11290)
mRNA_5869 (14237)
Ribonucleoside-diphosphate reductase (in reverse):
ADP + a reduced NrdH glutaredoxin-like protein→dADP + an oxidized NrdH glutaredoxin-like protein + H2O (EC 1.17.4.1)
mRNA_2804 (11172)
mRNA_2922 (11290)
mRNA_5869 (14237)
Ribonucleoside-diphosphate reductase (in reverse):
GDP + a reduced NrdH glutaredoxin-like protein→dGDP + an oxidized NrdH glutaredoxin-like protein + H2O (EC 1.17.4.1)
mRNA_2804 (11172)
mRNA_2922 (11290)
mRNA_5869 (14237)
Nucleoside-diphosphate kinase:
dADP + ATP→ADP + dATP (EC 2.7.4.6)
mRNA_7311 (15679)
mRNA_575 (8943)
Nucleoside-diphosphate kinase:
dGDP + ATP→dGTP + ADP (EC 2.7.4.6)
mRNA_7311 (15679)
mRNA_575 (8943)
ATP + formate + H+→dATP + CO2 + H2O (EC 1.1.98.6)
No genes
GTP + formate + H+→dGTP + CO2 + H2O (EC 1.1.98.6)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information