MetaCyc Pathway: folate transformations II (plants) in Rhodosporidium toruloides IFO0880

Add experiment(s):


5-formyltetrahydrofolate cyclo-ligase:
a (6S)-5-formyltetrahydrofolate + ATP→a 5,10-methenyltetrahydrofolate + ADP + phosphate
(EC 6.3.3.2)
mRNA_4194 (12562)
Dihydrofolate reductase (in reverse):
a 7,8-dihydrofolate + NADPH + H+→a tetrahydrofolate + NADP+
(EC 1.5.1.3)
No genes
Formate--tetrahydrofolate ligase:
a tetrahydrofolate + ATP + formate→an N10-formyltetrahydrofolate + ADP + phosphate
(EC 6.3.4.3)
mRNA_6998 (15366)
a tetrahydrofolate + glycine + NAD+→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
mRNA_1672 (10040)
Glycine hydroxymethyltransferase:
a tetrahydrofolate + L-serine→a 5,10-methylenetetrahydrofolate + glycine + H2O
(EC 2.1.2.1)
mRNA_3893 (12261)
mRNA_4293 (12661)
mRNA_4944 (13312)
mRNA_1299 (9667)
Methionine synthase:
a 5-methyltetrahydrofolate + L-homocysteine→a tetrahydrofolate + L-methionine
(EC 2.1.1.13)
mRNA_7391 (15759)
Methylenetetrahydrofolate dehydrogenase (NADP(+)):
a 5,10-methylenetetrahydrofolate + NADP+→a 5,10-methenyltetrahydrofolate + NADPH
(EC 1.5.1.5)
mRNA_4257 (12625)
mRNA_6998 (15366)
a 5,10-methylenetetrahydrofolate + NADH + H+→a 5-methyltetrahydrofolate + NAD+ (EC 1.5.1.54)
No genes
Thymidylate synthase:
a 5,10-methylenetetrahydrofolate + dUMP→a 7,8-dihydrofolate + dTMP
(EC 2.1.1.45)
mRNA_2476 (10844)
mRNA_2477 (10845)
Methenyltetrahydrofolate cyclohydrolase:
a 5,10-methenyltetrahydrofolate + H2O→an N10-formyltetrahydrofolate + H+
(EC 3.5.4.9)
mRNA_4257 (12625)
mRNA_6998 (15366)
a 5,10-methenyltetrahydrofolate + H2O→a (6S)-5-formyltetrahydrofolate + H+
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information