MetaCyc Pathway: urea cycle in Rhodosporidium toruloides IFO0880

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Carbamoyl-phosphate synthase (ammonia):
ammonium + 2 ATP + hydrogencarbonate→carbamoyl phosphate + 2 ADP + 2 H+ + phosphate (EC 6.3.4.16; 6.3.5.5)
mRNA_3934 (12302)
mRNA_4929 (13297)
mRNA_8313 (16681)
Ornithine carbamoyltransferase:
carbamoyl phosphate + L-ornithine→L-citrulline + H+ + phosphate (EC 2.1.3.3)
mRNA_4934 (13302)
Argininosuccinate synthase:
L-citrulline + ATP + L-aspartate→L-arginino-succinate + AMP + diphosphate + H+ (EC 6.3.4.5)
mRNA_7828 (16196)
Argininosuccinate lyase:
L-arginino-succinate→L-arginine + fumarate (EC 4.3.2.1)
mRNA_3236 (11604)
Arginase:
L-arginine + H2O→L-ornithine + urea (EC 3.5.3.1)
mRNA_7813 (16181)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information