MetaCyc Pathway: 4-aminobutanoate degradation V in Rhodosporidium toruloides IFO0880

Add experiment(s):


4-aminobutyrate transaminase:
4-aminobutanoate + 2-oxoglutarate→L-glutamate + succinate semialdehyde (EC 2.6.1.19)
mRNA_2569 (10937)
mRNA_7537 (15905)
4-hydroxybutyrate dehydrogenase (in reverse):
succinate semialdehyde + NADH + H+→4-hydroxybutanoate + NAD+ (EC 1.1.1.61)
No genes
Glutamate dehydrogenase:
L-glutamate + NAD+ + H2O→ammonium + 2-oxoglutarate + NADH + H+ (EC 1.4.1.2)
mRNA_1488 (9856)
4-hydroxybutanoate + acetyl-CoA→4-hydroxybutanoyl-CoA + acetate (EC 2.8.3.M6)
No genes
4-hydroxybutanoyl-CoA→crotonyl-CoA + H2O (EC 4.2.1.120)
No genes
crotonyl-CoA[cytosol] + 2 NADH[cytosol] + 2 an oxidized ferredoxin [iron-sulfur] cluster[cytosol]→butanoyl-CoA[cytosol] + 2 NAD+[cytosol] + 2 a reduced ferredoxin [iron-sulfur] cluster[cytosol] (EC 1.3.1.109)
No genes
Propionate CoA-transferase:
acetate + butanoyl-CoA→butanoate + acetyl-CoA (EC 2.8.3.1; 2.8.3.8)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information