MetaCyc Pathway: TCA cycle II (plants and fungi) in Rhodosporidium toruloides IFO0880

Add experiment(s):


2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
mRNA_5262 (13630)
mRNA_5580 (13948)
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
mRNA_7599 (15967)
mRNA_7776 (16144)
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1)
mRNA_3261 (11629)
mRNA_3609 (11977)
mRNA_7913 (16281)
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2)
mRNA_5633 (14001)
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
mRNA_2246 (10614)
mRNA_2810 (11178)
mRNA_4393 (12761)
mRNA_5549 (13917)
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16)
mRNA_2960 (11328)
mRNA_2963 (11331)
mRNA_180 (8548)
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
mRNA_3256 (11624)
mRNA_6232 (14600)
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
mRNA_3256 (11624)
mRNA_6232 (14600)
Isocitrate--homoisocitrate dehydrogenase:
D-threo-isocitrate + NAD+→2-oxoglutarate + CO2 + NADH (EC 1.1.1.286; 1.1.1.41)
mRNA_3313 (11681)
mRNA_3314 (11682)

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information