MetaCyc Pathway: partial TCA cycle (obligate autotrophs) in Rhodosporidium toruloides IFO0880

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Phosphoenolpyruvate carboxylase (in reverse):
phosphoenolpyruvate + hydrogencarbonate→oxaloacetate + phosphate (EC 4.1.1.31)
No genes
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16)
mRNA_2960 (11328)
mRNA_2963 (11331)
mRNA_180 (8548)
oxaloacetate[in] + an electron-transfer quinol→(S)-malate[in] + an electron-transfer quinone (EC 1.1.5.4)
No genes
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
mRNA_3256 (11624)
mRNA_6232 (14600)
Fumarate hydratase:
(S)-malate→fumarate + H2O (EC 4.2.1.2)
mRNA_5633 (14001)
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
mRNA_3256 (11624)
mRNA_6232 (14600)
Succinate dehydrogenase (ubiquinone) (in reverse):
fumarate[in] + an electron-transfer quinol→succinate[in] + an electron-transfer quinone (EC 1.3.5.1)
mRNA_3261 (11629)
mRNA_3609 (11977)
mRNA_7913 (16281)
Isocitrate dehydrogenase (NADP(+)):
D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH (EC 1.1.1.42)
mRNA_2761 (11129)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information