MetaCyc Pathway: botryococcenes and methylated squalene biosynthesis in Rhodosporidium toruloides IFO0880

Add experiment(s):


2 (2E,6E)-farnesyl diphosphate→presqualene diphosphate + diphosphate (EC 2.5.1.103; 2.5.1.21; 2.5.1.96)
mRNA_8223 (16591)
presqualene diphosphate + NADPH + H+→C30 botryococcene + NADP+ + diphosphate (EC 1.3.1.97)
No genes
presqualene diphosphate + NADPH + H+→squalene + NADP+ + diphosphate (EC 1.3.1.96)
No genes
C30 botryococcene + S-adenosyl-L-methionine→showacene + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.263)
No genes
squalene + S-adenosyl-L-methionine→3-methyl-1,2-didehydro-2,3-dihydrosqualene + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.262)
No genes
showacene + S-adenosyl-L-methionine→3,20-dimethyl-1,2,21,22-tetradehydro-2,3,20,21-tetrahydrobotryococcene + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.263)
No genes
3-methyl-1,2-didehydro-2,3-dihydrosqualene + S-adenosyl-L-methionine→3,22-dimethyl-1,2,23,24-tetradehydro-2,3,22,23-tetrahydrosqualene + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.262)
No genes
3,20-dimethyl-1,2,21,22-tetradehydro-2,3,20,21-tetrahydrobotryococcene + S-adenosyl-L-methionine→C33 botryococcene + S-adenosyl-L-homocysteine + H+
No genes
C33 botryococcene + S-adenosyl-L-methionine→a C34 botryococcenes + S-adenosyl-L-homocysteine + H+
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information