MetaCyc Pathway: D-galacturonate degradation III in Rhodosporidium toruloides IFO0880
| D-galactopyranuronate→aldehydo-D-galacturonate (spontaneous) |
| No genes |
| aldehydo-D-galacturonate + NADPH + H+→L-galactonate + NADP+ (EC 1.1.1.365) |
| mRNA |
| mRNA |
| L-galactonate→2-dehydro-3-deoxy-L-galactonate + H2O (EC 4.2.1.146) |
| No genes |
| 2-dehydro-3-deoxy-L-galactonate→L-glyceraldehyde + pyruvate (EC 4.1.2.54) |
| No genes |
| L-glyceraldehyde + NADPH + H+→glycerol + NADP+ (EC 1.1.1.372) |
| mRNA |
Links:
- Pathway details at MetaCyc
- Fitness data for 3 genes
- All MetaCyc pathways for Rhodosporidium toruloides IFO0880
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information