MetaCyc Pathway: L-tryptophan degradation XII (Geobacillus) in Rhodosporidium toruloides IFO0880

Add experiment(s):


Tryptophan 2,3-dioxygenase:
L-tryptophan + dioxygenN-Formyl-L-kynurenine
(EC 1.13.11.11; 1.13.11.52)
No genes
Arylformamidase:
N-Formyl-L-kynurenine + H2O→L-kynurenine + formate + H+
(EC 3.5.1.9)
No genes
Kynureninase:
L-kynurenine + H2O→anthranilate + L-alanine + H+
(EC 3.7.1.3)
mRNA_357 (8725)
anthranilate + FADH2 + dioxygen→3-hydroxyanthranilate + FAD + H+ + H2O (EC 1.14.14.8)
No genes
3-hydroxyanthranilate 3,4-dioxygenase:
3-hydroxyanthranilate + dioxygen→2-amino-3-carboxymuconate-6-semialdehyde
(EC 1.13.11.6)
mRNA_234 (8602)
Aminocarboxymuconate-semialdehyde decarboxylase:
2-amino-3-carboxymuconate-6-semialdehyde + H+→(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate + CO2
(EC 4.1.1.45)
No genes
Aminomuconate-semialdehyde dehydrogenase:
(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate + NAD+ + H2O→(2Z,4E)-2-aminomuconate + NADH + 2 H+
(EC 1.2.1.32)
No genes
2-aminomuconate deaminase:
(2Z,4E)-2-aminomuconate + H2O→(3E)-2-oxohex-3-enedioate + ammonium
(EC 3.5.99.5)
No genes
4-oxalocrotonate decarboxylase:
(3E)-2-oxohex-3-enedioate + H+→(2Z)-2-hydroxypenta-2,4-dienoate + CO2
(EC 4.1.1.77)
No genes
2-oxopent-4-enoate hydratase (in reverse):
(2Z)-2-hydroxypenta-2,4-dienoate + H2O→(S)-4-hydroxy-2-oxopentanoate
(EC 4.2.1.80)
No genes
4-hydroxy-2-oxovalerate aldolase:
(S)-4-hydroxy-2-oxopentanoate→acetaldehyde + pyruvate
(EC 4.1.3.39)
No genes
Acetaldehyde dehydrogenase (acetylating):
acetaldehyde + coenzyme A + NAD+→acetyl-CoA + NADH + H+
(EC 1.2.1.10)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information