MetaCyc Pathway: tRNA splicing I in Rhodosporidium toruloides IFO0880

Add experiment(s):


a polycistronic tRNA precursor→a 3'-half-tRNA molecule with a 5'-OH end + a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end + a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus (EC 4.6.1.16)
No genes
a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end + H2O→a 5' half-tRNA molecule with a 2' phosphate on its 3' end + H+ (EC 6.5.1.M3)
No genes
a 3'-half-tRNA molecule with a 5'-OH end + ATP→a 3' half-tRNA molecule with a phosphate on its 5' end + ADP + H+ (EC 6.5.1.M3)
No genes
a 3' half-tRNA molecule with a phosphate on its 5' end + a 5' half-tRNA molecule with a 2' phosphate on its 3' end + ATP→a 2'-phospho-[ligated tRNA] + AMP + diphosphate (EC 6.5.1.M3)
No genes
2'-phosphotransferase:
a 2'-phospho-[ligated tRNA] + NAD+→ADP ribose 1'',2''-cyclic phosphate + a spliced tRNA + nicotinamide (EC 2.7.1.160)
mRNA_3769 (12137)
ADP ribose 1'',2''-cyclic phosphate + H2O→ADP ribose 1''-phosphate + H+
No genes
ADP ribose 1''-phosphate + H2O→ADP-D-ribose + phosphate (EC 3.1.3.84)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information