MetaCyc Pathway: mandelate degradation to acetyl-CoA in Rhodosporidium toruloides IFO0880

Add experiment(s):


Mandelate racemase (in reverse):
(R)-mandelate→(S)-mandelate
(EC 5.1.2.2)
No genes
(S)-mandelate dehydrogenase:
(S)-mandelate + an oxidized unknown electron carrier→phenylglyoxylate + a reduced unknown two electron carrier
(EC 1.1.99.31)
No genes
Benzoylformate decarboxylase:
phenylglyoxylate + H+→benzaldehyde + CO2
(EC 4.1.1.7)
No genes
Benzaldehyde dehydrogenase (NAD(+)):
benzaldehyde + NAD+ + H2O→benzoate + NADH + 2 H+
(EC 1.2.1.28)
No genes
Benzaldehyde dehydrogenase (NADP(+)):
benzaldehyde + NADP+ + H2O→benzoate + NADPH + 2 H+
(EC 1.2.1.7)
No genes
Benzoate 1,2-dioxygenase:
benzoate + NADH + dioxygen + H+→3,5-cyclohexadiene-1,2-diol-1-carboxylate + NAD+
(EC 1.14.12.10)
No genes
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase:
3,5-cyclohexadiene-1,2-diol-1-carboxylate + NAD+→catechol + CO2 + NADH
(EC 1.3.1.25)
No genes
Catechol 1,2-dioxygenase:
catechol + dioxygen→cis,cis-muconate + 2 H+
(EC 1.13.11.1)
mRNA_3938 (12306)
mRNA_267 (8635)
mRNA_732 (9100)
Catechol 2,3-dioxygenase:
catechol + dioxygen→(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate + H+
(EC 1.13.11.2)
No genes
2-hydroxymuconate-semialdehyde hydrolase:
(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate + H2O→(2Z)-2-hydroxypenta-2,4-dienoate + formate + H+
(EC 3.7.1.9)
No genes
Muconate cycloisomerase (in reverse):
cis,cis-muconate + H+→(+)-muconolactone
(EC 5.5.1.1)
No genes
2-oxopent-4-enoate hydratase (in reverse):
(2Z)-2-hydroxypenta-2,4-dienoate + H2O→(S)-4-hydroxy-2-oxopentanoate
(EC 4.2.1.80)
No genes
Muconolactone Delta-isomerase:
(+)-muconolactone→(4,5-dihydro-5-oxofuran-2-yl)-acetate
(EC 5.3.3.4)
No genes
3-oxoadipate enol-lactonase:
(4,5-dihydro-5-oxofuran-2-yl)-acetate + H2O→3-oxoadipate + H+
(EC 3.1.1.24)
No genes
4-hydroxy-2-oxovalerate aldolase:
(S)-4-hydroxy-2-oxopentanoate→acetaldehyde + pyruvate
(EC 4.1.3.39)
No genes
3-oxoadipate CoA-transferase:
3-oxoadipate + succinyl-CoA→3-oxoadipyl-CoA + succinate
(EC 2.8.3.6)
No genes
Acetaldehyde dehydrogenase (acetylating):
acetaldehyde + coenzyme A + NAD+→acetyl-CoA + NADH + H+
(EC 1.2.1.10)
No genes
3-oxoadipyl-CoA thiolase (in reverse):
3-oxoadipyl-CoA + coenzyme A→acetyl-CoA + succinyl-CoA
(EC 2.3.1.174)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information