MetaCyc Pathway: L-methionine degradation II in Rhodosporidium toruloides IFO0880
| Methionine gamma-lyase: L-methionine→(2Z)-2-aminobut-2-enoate + methanethiol + H+ (EC 4.4.1.11) |
| No genes |
| 1-aminocyclopropane-1-carboxylate deaminase: (2Z)-2-aminobut-2-enoate→2-iminobutanoate (spontaneous) (EC 3.5.99.7; 4.3.1.19; 4.4.1.1; 4.4.1.11; 4.4.1.2) |
| mRNA |
| mRNA |
| mRNA |
| 2-iminobutanoate + H+ + H2O→2-oxobutanoate + ammonium (spontaneous) (EC 3.5.99.10; 3.5.99.7; 4.3.1.19; 4.4.1.1; 4.4.1.11; 4.4.1.2) |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
Links:
- Pathway details at MetaCyc
- Fitness data for 4 genes
- All MetaCyc pathways for Rhodosporidium toruloides IFO0880
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information