MetaCyc Pathway: L-arabinose degradation IV in Rhodosporidium toruloides IFO0880

Add experiment(s):


L-arabinopyranose→L-arabinofuranose (spontaneous)
No genes
L-arabinofuranose + NAD(P)+→L-arabinono-1,4-lactone + NAD(P)H + H+ (EC 1.1.1.376)
No genes
L-arabinonolactonase:
L-arabinono-1,4-lactone + H2O→L-arabinonate + H+ (EC 3.1.1.15)
No genes
L-arabinonate dehydratase:
L-arabinonate→2-dehydro-3-deoxy-L-arabinonate + H2O (EC 4.2.1.25)
No genes
2-dehydro-3-deoxy-L-pentonate aldolase:
2-dehydro-3-deoxy-L-arabinonate→glycolaldehyde + pyruvate (EC 4.1.2.18)
No genes
glycolaldehyde + an oxidized unknown electron carrier→glycolate + a reduced unknown two electron carrier + H+
No genes
Glyoxylate reductase:
glycolate + NAD+→glyoxylate + NADH + H+ (EC 1.1.1.26)
No genes
Malate synthase:
glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
mRNA_1089 (9457)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information