MetaCyc Pathway: protein ubiquitination in Rhodosporidium toruloides IFO0880

Add experiment(s):


a [ubiquitin] C-terminal glycine + ATP + an [E1 ubiquitin-activating enzyme]-L-cysteine→an [E1 ubiquitin-activating enzyme]-S-ubiquitinyl-L-cysteine + AMP + diphosphate (EC 6.2.1.45)
mRNA_579 (8947)
an [E1 ubiquitin-activating enzyme]-S-ubiquitinyl-L-cysteine + an [E2 ubiquitin-conjugating enzyme]-L-cysteine→an [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + an [E1 ubiquitin-activating enzyme]-L-cysteine (EC 2.3.2.23)
mRNA_3738 (12106)
mRNA_5275 (13643)
mRNA_7178 (15546)
mRNA_514 (8882)
mRNA_1217 (9585)
an [E1 ubiquitin-activating enzyme]-S-ubiquitinyl-L-cysteine + an [N-terminal E2 ubiquitin-conjugating enzyme]-L-cysteine→an [N-terminal E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + an [E1 ubiquitin-activating enzyme]-L-cysteine (EC 2.3.2.25)
No genes
an [E1 ubiquitin-activating enzyme]-S-ubiquitinyl-L-cysteine + an [(E3-independent) E2 ubiquitin-conjugating enzyme]-L-cysteine→an [(E3-independent) E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + an [E1 ubiquitin-activating enzyme]-L-cysteine (EC 2.3.2.24)
No genes
an [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + a [HECT-type E3 ubiquitin transferase]-L-cysteine→a [HECT-type E3 ubiquitin transferase]-S-ubiquitinyl-L-cysteine + an [E2 ubiquitin-conjugating enzyme]-L-cysteine (EC 2.3.2.26)
No genes
an [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + a [protein]-L-lysine→a [protein]-N6-monoubiquitinyl-L-lysine + H+ + an [E2 ubiquitin-conjugating enzyme]-L-cysteine (EC 2.3.2.27)
mRNA_8115 (16483)
mRNA_680 (9048)
an [N-terminal E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + an N-terminal amino acyl-[protein]→an N-terminal-monoubiquitinyl-[protein] + an [N-terminal E2 ubiquitin-conjugating enzyme]-L-cysteine + H+ (EC 2.3.2.25)
No genes
an [(E3-independent) E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + a [protein]-L-lysine→a [protein]-N6-monoubiquitinyl-L-lysine + an [(E3-independent) E2 ubiquitin-conjugating enzyme]-L-cysteine + H+ (EC 2.3.2.24)
No genes
a [HECT-type E3 ubiquitin transferase]-S-ubiquitinyl-L-cysteine + a [protein]-L-lysine→a [protein]-N6-monoubiquitinyl-L-lysine + a [HECT-type E3 ubiquitin transferase]-L-cysteine + H+ (EC 2.3.2.26)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information