MetaCyc Pathway: (5Z)-dodecenoate biosynthesis II in Rhodosporidium toruloides IFO0880

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Acyl-CoA oxidase:
a decanoyl-[acyl-carrier protein] + dioxygen→a (2E)-dec-2-enoyl-[acp] + hydrogen peroxide (EC 1.3.3.6)
mRNA_4374 (12742)
mRNA_1332 (9700)
Trans-2-decenoyl-[acyl-carrier-protein] isomerase:
a (2E)-dec-2-enoyl-[acp]→a (3Z)-dec-3-enoyl-[acp] (EC 5.3.3.14)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (3Z)-dec-3-enoyl-[acp] + a malonyl-[acp] + H+→a (5Z)-3-oxododec-5-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
mRNA_409 (8777)
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (5Z)-3-oxododec-5-enoyl-[acp] + NADPH + H+→a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp] + NADP+ (EC 1.1.1.100)
mRNA_2183 (10551)
mRNA_2190 (10558)
mRNA_5625 (13993)
mRNA_5899 (14267)
mRNA_7804 (16172)
mRNA_409 (8777)
mRNA_537 (8905)
mRNA_1363 (9731)
mRNA_1469 (9837)
mRNA_1622 (9990)
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp]→a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + H2O (EC 4.2.1.59)
No genes
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + NADH + H+→a (5Z)-dodec-5-enoyl-[acp] + NAD+ (EC 1.3.1.9)
mRNA_3897 (12265)
mRNA_409 (8777)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information