MetaCyc Pathway: limonene degradation IV (anaerobic) in Rhodosporidium toruloides IFO0880
| limonene + an oxidized unknown electron carrier + H2O→perillyl alcohol + a reduced unknown two electron carrier (EC 1.17.99.8) |
| No genes |
| Perillyl-alcohol dehydrogenase: perillyl alcohol + NAD+→perillyl aldehyde + NADH + H+ (EC 1.1.1.144) |
| mRNA |
| Aldehyde dehydrogenase (NAD(+)): perillyl aldehyde + NAD+ + H2O→perillate + NADH + 2 H+ (EC 1.2.1.3) |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| mRNA |
| perillate + ATP + coenzyme A→perillyl-CoA + AMP + diphosphate (EC 6.2.1.M31) |
| No genes |
| perillyl-CoA + H2O→2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA |
| No genes |
| 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA + NAD+→2-oxo-4-Isopropenylcyclohexane-1-carboxyl-CoA + NADH + H+ |
| No genes |
| 2-oxo-4-Isopropenylcyclohexane-1-carboxyl-CoA + H2O→4-(isopropenyl)pimeloyl-CoA + H+ |
| No genes |
Links:
- Pathway details at MetaCyc
- Fitness data for 13 genes
- All MetaCyc pathways for Rhodosporidium toruloides IFO0880
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information