MetaCyc Pathway: allantoin degradation IV (anaerobic) in Rhodosporidium toruloides IFO0880

Add experiment(s):


Allantoinase:
(S)-(+)-allantoin + H2O→allantoate + H+ (EC 3.5.2.5)
mRNA_3516 (11884)
Allantoate deiminase:
allantoate + 2 H+ + H2O→(S)-ureidoglycine + ammonium + CO2 (EC 3.5.3.9)
No genes
(S)-ureidoglycine + H2O→(S)-ureidoglycolate + ammonium (EC 3.5.3.26)
No genes
Ureidoglycolate dehydrogenase:
(S)-ureidoglycolate + NAD(P)+→N-carbamoyl-2-oxoglycine + NAD(P)H + H+ (EC 1.1.1.154)
No genes
(S)-ureidoglycolate + NAD+→N-carbamoyl-2-oxoglycine + NADH + H+ (EC 1.1.1.350)
No genes
Oxamate carbamoyltransferase (in reverse):
N-carbamoyl-2-oxoglycine + phosphate→carbamoyl phosphate + oxamate (EC 2.1.3.5)
No genes
Carbamate kinase (in reverse):
carbamoyl phosphate + ADP→carbamate + ATP (EC 2.7.2.2; 6.3.4.16)
No genes
carbamate + 2 H+→CO2 + ammonium (spontaneous) (EC 3.5.1.110; 3.5.1.54; 4.2.1.104)
mRNA_2726 (11094)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information