MetaCyc Pathway: gluconeogenesis III in Rhodosporidium toruloides IFO0880

MetaCyc Pathway: gluconeogenesis III in Rhodosporidium toruloides IFO0880

Pyruvate carboxylase:
pyruvate + ATP + hydrogencarbonate→oxaloacetate + ADP + H⁺ + phosphate (EC 6.4.1.1)

mRNA_8262 (16630)

Malate dehydrogenase:
(S)-malate + NAD⁺→oxaloacetate + NADH + H⁺ (EC 1.1.1.37; 1.1.1.38)

mRNA_2246 (10614)

mRNA_2810 (11178)

mRNA_4393 (12761)

mRNA_5549 (13917)

Phosphoenolpyruvate carboxykinase (GTP):
oxaloacetate + GTP→phosphoenolpyruvate + CO₂ + GDP (EC 4.1.1.32)

No genes

Phosphopyruvate hydratase (in reverse):
phosphoenolpyruvate + H₂O→2-phospho-D-glycerate (EC 4.2.1.11)

mRNA_4451 (12819)

mRNA_8034 (16402)

mRNA_669 (9037)

2-phospho-D-glycerate→3-phospho-D-glycerate (EC 5.4.2.11)

No genes

Phosphoglycerate kinase:
3-phospho-D-glycerate + ATP→3-phospho-D-glyceroyl phosphate + ADP (EC 2.7.2.3)

mRNA_7353 (15721)

Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (in reverse):
3-phospho-D-glyceroyl phosphate + NADH + H⁺→D-glyceraldehyde 3-phosphate + NAD⁺ + phosphate (EC 1.2.1.12)

mRNA_2245 (10613)

mRNA_3311 (11679)

Triose-phosphate isomerase:
D-glyceraldehyde 3-phosphate→glycerone phosphate (EC 5.3.1.1)

mRNA_6808 (15176)

mRNA_7700 (16068)

mRNA_8276 (16644)

mRNA_932 (9300)

Fructose-bisphosphate aldolase (in reverse):
glycerone phosphate + D-glyceraldehyde 3-phosphate→β-D-fructofuranose 1,6-bisphosphate (EC 4.1.2.13)

mRNA_7052 (15420)

Fructose-bisphosphatase:
β-D-fructofuranose 1,6-bisphosphate + H₂O→β-D-fructofuranose 6-phosphate + phosphate (EC 3.1.3.11)

mRNA_7055 (15423)

Glucose-6-phosphate isomerase (in reverse):
β-D-fructofuranose 6-phosphate→D-glucopyranose 6-phosphate (EC 5.3.1.9)

mRNA_1221 (9589)

Sugar-terminal-phosphatase:
D-glucopyranose 6-phosphate + H₂O→D-glucopyranose + phosphate (EC 3.1.3.58; 3.1.3.9)

No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information