MetaCyc Pathway: superpathway of thiamine diphosphate biosynthesis III (eukaryotes) in Rhodosporidium toruloides IFO0880

Add experiment(s):


5-amino-1-(5-phospho-β-D-ribosyl)imidazole + S-adenosyl-L-methionine→4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + carbon monoxide + 5'-deoxyadenosine + formate + L-methionine + 3 H+ (EC 4.1.99.17)
No genes
glycine + NAD+ + a [protein]-L-cysteine→ADP-5-ethyl-4-methylthiazole-2-carboxylate + a [protein]-2-aminoprop-2-enoate + nicotinamide + 2 H+ + 3 H2O (EC 2.4.2.60)
No genes
Phosphomethylpyrimidine kinase:
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ATP→4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + ADP (EC 2.7.4.7)
No genes
ADP-5-ethyl-4-methylthiazole-2-carboxylate + H2O→4-methyl-5-(2-phosphooxyethyl)thiazole + AMP + CO2 + H+
No genes
Thiamine-phosphate diphosphorylase:
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 4-methyl-5-(2-phosphooxyethyl)thiazole + H+→thiamine phosphate + diphosphate (EC 2.5.1.3)
mRNA_7845 (16213)
thiamine phosphate + H2O→thiamine + phosphate (EC 3.1.3.100)
No genes
Thiamine diphosphokinase:
thiamine + ATP→thiamine diphosphate + AMP + H+ (EC 2.7.6.2)
mRNA_8116 (16484)

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information