SEED Subsystem: CO2 uptake, carboxysome in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
Bicarbonate transport system permease protein No genes
Bicarbonate transporter, bicarbonate binding protein No genes
Bicarbonate transporter, bicarbonate binding protein 2 No genes
Carbon dioxide concentrating mechanism protein CcmL No genes
Carbon dioxide concentrating mechanism protein CcmM No genes
Carbon dioxide concentrating mechanism protein CcmN No genes
Carbon dioxide concentrating mechanism protein CcmO No genes
Carboxysome protein CcmL No genes
Carboxysome protein CcmM No genes
Carboxysome protein CcmN No genes
High-affnity carbon uptake protein Hat/HatR mRNA_1871 10239
  mRNA_2784 11152
  mRNA_3110 11478
  mRNA_3156 11524
  mRNA_3490 11858
  mRNA_3526 11894
  mRNA_3858 12226
  mRNA_4091 12459
  mRNA_4341 12709
  mRNA_4863 13231
  mRNA_4910 13278
  mRNA_5094 13462
  mRNA_5107 13475
  mRNA_5303 13671
  mRNA_5749 14117
  mRNA_5842 14210
  mRNA_5846 14214
  mRNA_5874 14242
  mRNA_6127 14495
  mRNA_6297 14665
  mRNA_6519 14887
  mRNA_6550 14918
  mRNA_6556 14924
  mRNA_6754 15122
  mRNA_6859 15227
  mRNA_7054 15422
  mRNA_7168 15536
  mRNA_7208 15576
  mRNA_7978 16346
  mRNA_8155 16523
  mRNA_8158 16526
  mRNA_457 8825
  mRNA_479 8847
  mRNA_1157 9525
  mRNA_1182 9550
  mRNA_1541 9909
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog No genes
Low-affinity CO2 hydration protein CphX No genes
NADH dehydrogenase subunit 4, Involved in CO2 fixation No genes
NADH dehydrogenase subunit 5, Involved in CO2 fixation No genes
Possible RuBisCo chaperonin RbcX No genes
Possible carbon dioxide concentrating mechanism protein CcmK No genes
Possible pterin-4 alpha-carbinolamine dehydratase-like protein No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
RuBisCO operon transcriptional regulator No genes
RuBisCO operon transcriptional regulator CbbR No genes
Rubisco activation protein CbbO No genes
Rubisco activation protein CbbQ No genes
Sensory subunit of low CO2-induced protein complex, putative No genes
carboxysome shell protein CsoS1 No genes
carboxysome shell protein CsoS2 No genes
carboxysome shell protein CsoS3 No genes
probable RuBisCo-expression protein CbbX No genes
putative carboxysome peptide A No genes
putative carboxysome peptide B No genes
putative sodium-dependent bicarbonate transporter No genes
ribulose 1,5-bisphosphate carboxylase/oxygenase activase No genes

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