SEED Subsystem: Choline and Betaine Uptake and Betaine Biosynthesis in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1) No genes
Betaine aldehyde dehydrogenase (EC 1.2.1.8) No genes
Choline ABC transport system, ATP-binding protein OpuBA No genes
Choline ABC transport system, choline-binding protein OpuBC No genes
Choline ABC transport system, permease protein OpuBB No genes
Choline ABC transport system, permease protein OpuBD No genes
Choline binding protein A No genes
Choline binding protein D No genes
Choline dehydrogenase (EC 1.1.99.1) mRNA_2848 11216
  mRNA_3274 11642
  mRNA_5156 13524
Choline-sulfatase (EC 3.1.6.6) mRNA_6915 15283
GbcA Glycine betaine demethylase subunit A No genes
GbcB Glycine betaine demethylase subunit B No genes
Glycine betaine ABC transport system permease protein No genes
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32) No genes
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC No genes
Glycine betaine ABC transport system, permease protein OpuAB No genes
Glycine betaine ABC transport system, permease/glycine betaine-binding protein OpuABC No genes
Glycine betaine transporter OpuD No genes
Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein No genes
HTH-type transcriptional regulator BetI No genes
High-affinity choline uptake protein BetT No genes
L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) mRNA_2131 10499
  mRNA_7194 15562
L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) No genes
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) No genes
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD No genes
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC No genes
Sarcosine oxidase alpha subunit (EC 1.5.3.1) No genes
Sarcosine oxidase beta subunit (EC 1.5.3.1) No genes
Sarcosine oxidase delta subunit (EC 1.5.3.1) No genes
Sarcosine oxidase gamma subunit (EC 1.5.3.1) No genes

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