SEED Subsystem: DNA repair, bacterial in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
A/G-specific adenine glycosylase (EC 3.2.2.-) mRNA_4979 13347
ADA regulatory protein No genes
Alkylated DNA repair protein AlkB No genes
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) mRNA_6668 15036
  mRNA_415 8783
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 No genes
DNA recombination protein RmuC No genes
DNA recombination-dependent growth factor C No genes
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA mRNA_3329 11697
DNA repair protein RadC No genes
DNA repair protein RecN No genes
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J No genes
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) mRNA_4038 12406
  mRNA_6088 14456
  mRNA_7016 15384
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) No genes
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) No genes
Exonuclease SbcC mRNA_8120 16488
Exonuclease SbcD No genes
G:T/U mismatch-specific uracil/thymine DNA-glycosylase No genes
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) No genes
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) No genes
RecA protein No genes
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) No genes
Single-stranded DNA-binding protein mRNA_4943 13311
  mRNA_7572 15940
  mRNA_1430 9798
Very-short-patch mismatch repair endonuclease (G-T specific) No genes

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