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SEED Subsystem: Entner-Doudoroff Pathway in
Rhodosporidium toruloides IFO0880
Experiments:
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Role
Gene
Name
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (
EC 5.4.2.1
)
No genes
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (
EC 5.4.2.1
)
No genes
2-dehydro-3-deoxygluconate aldolase (EC 4.1.2-)
No genes
2-dehydro-3-deoxygluconate kinase (
EC 2.7.1.45
)
No genes
2-dehydro-3-deoxyphosphogluconate aldolase (
EC 4.1.2.14
)
No genes
6-phosphogluconolactonase (
EC 3.1.1.31
)
No genes
6-phosphogluconolactonase (
EC 3.1.1.31
), eukaryotic type
mRNA
_6131
14499
Aldehyde dehydrogenase (
EC 1.2.1.3
)
mRNA
_2053
10421
mRNA
_2289
10657
mRNA
_2380
10748
mRNA
_2756
11124
mRNA
_3674
12042
mRNA
_3891
12259
mRNA
_4582
12950
mRNA
_5058
13426
mRNA
_7955
16323
mRNA
_8468
16836
mRNA
_324
8692
D-glycerate 2-kinase (EC 2.7.1.-)
No genes
Enolase (
EC 4.2.1.11
)
mRNA
_4451
12819
mRNA
_8034
16402
mRNA
_669
9037
Glucokinase (
EC 2.7.1.2
)
No genes
Gluconate dehydratase (
EC 4.2.1.39
)
No genes
Gluconokinase (
EC 2.7.1.12
)
mRNA
_8291
16659
Gluconolactonase (
EC 3.1.1.17
)
No genes
Glucose 1-dehydrogenase (
EC 1.1.1.47
)
No genes
Glucose dehydrogenase, PQQ-dependent (
EC 1.1.5.2
)
No genes
Glucose-6-phosphate 1-dehydrogenase (
EC 1.1.1.49
)
mRNA
_1632
10000
Hexokinase (
EC 2.7.1.1
)
mRNA
_1896
10264
mRNA
_3614
11982
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (
EC 1.2.1.12
)
mRNA
_2245
10613
mRNA
_3311
11679
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD)
No genes
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (
EC 1.2.1.9
)
No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial
No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, cyanobacterial
No genes
Phosphogluconate dehydratase (
EC 4.2.1.12
)
No genes
Phosphoglycerate kinase (
EC 2.7.2.3
)
mRNA
_7353
15721
Phosphoglycerate mutase (
EC 5.4.2.1
)
mRNA
_4025
12393
mRNA
_1542
9910
Polyphosphate glucokinase (
EC 2.7.1.63
)
No genes
Pyruvate kinase (
EC 2.7.1.40
)
mRNA
_2701
11069
mRNA
_4634
13002
Or select organism:
Rhodosporidium toruloides IFO0880
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