SEED Subsystem: Heat shock dnaK gene cluster extended in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
Chaperone protein DnaJ mRNA_2482 10850
  mRNA_6507 14875
  mRNA_6568 14936
  mRNA_6977 15345
  mRNA_8445 16813
  mRNA_100 8468
  mRNA_450 8818
Chaperone protein DnaK mRNA_3719 12087
  mRNA_8202 16570
  mRNA_608 8976
  mRNA_1615 9983
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX No genes
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) mRNA_1561 9929
Heat shock protein GrpE mRNA_6218 14586
Heat-inducible transcription repressor HrcA No genes
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) No genes
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB No genes
Ribonuclease PH (EC 2.7.7.56) No genes
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) No genes
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) No genes
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) No genes
Signal peptidase-like protein mRNA_6272 14640
Translation elongation factor LepA mRNA_7412 15780
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I No genes
tmRNA-binding protein SmpB No genes

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