SEED Subsystem: Isoleucine degradation in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) No genes
3-ketoacyl-CoA thiolase (EC 2.3.1.16) mRNA_5687 14055
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) No genes
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) No genes
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) mRNA_7068 15436
Branched-chain amino acid aminotransferase (EC 2.6.1.42) mRNA_5646 14014
  mRNA_6242 14610
  mRNA_6485 14853
Butyrate kinase (EC 2.7.2.7) No genes
Butyryl-CoA dehydrogenase (EC 1.3.99.2) mRNA_2040 10408
  mRNA_3718 12086
  mRNA_4202 12570
  mRNA_4621 12989
  mRNA_5702 14070
  mRNA_7885 16253
  mRNA_595 8963
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) No genes
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Enoyl-CoA hydratase (EC 4.2.1.17) mRNA_2742 11110
  mRNA_3539 11907
  mRNA_6437 14805
  mRNA_8147 16515
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) No genes
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-) No genes
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Probable acyl-CoA dehydrogenase (EC 1.3.99.3) No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon No genes
phosphotransbutyrylase (EC 2.3.1.19) No genes

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