SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 mRNA_1964 10332
GTP cyclohydrolase I (EC 3.5.4.16) type 2 No genes
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) mRNA_4016 12384
  mRNA_5402 13770
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) mRNA_2555 10923
  mRNA_2780 11148
  mRNA_3610 11978
  mRNA_7149 15517
  mRNA_7484 15852
  mRNA_7556 15924
  mRNA_67 8435
  mRNA_445 8813
  mRNA_459 8827
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily No genes
Putative preQ0 transporter No genes
Queuosine Biosynthesis QueC ATPase No genes
Queuosine Biosynthesis QueE Radical SAM No genes
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB No genes
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) No genes
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase No genes
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) No genes

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