SEED Subsystem: Serine-glyoxylate cycle in Rhodosporidium toruloides IFO0880

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) mRNA_5687 14055
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) mRNA_7115 15483
  mRNA_876 9244
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) mRNA_4194 12562
Acetoacetyl-CoA reductase (EC 1.1.1.36) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) mRNA_3256 11624
  mRNA_6232 14600
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) mRNA_2960 11328
  mRNA_2963 11331
  mRNA_180 8548
Enolase (EC 4.2.1.11) mRNA_4451 12819
  mRNA_8034 16402
  mRNA_669 9037
Formate--tetrahydrofolate ligase (EC 6.3.4.3) mRNA_6998 15366
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) No genes
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) No genes
Isocitrate lyase (EC 4.1.3.1) No genes
Malate dehydrogenase (EC 1.1.1.37) mRNA_2246 10614
  mRNA_2810 11178
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) mRNA_4257 12625
  mRNA_6998 15366
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) mRNA_4499 12867
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) mRNA_7326 15694
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) mRNA_4257 12625
  mRNA_6998 15366
Methylmalonyl-CoA mutase (EC 5.4.99.2) No genes
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) mRNA_2473 10841
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) mRNA_3893 12261
  mRNA_4293 12661
  mRNA_4944 13312
  mRNA_1299 9667
Serine--glyoxylate aminotransferase (EC 2.6.1.45) mRNA_451 8819
Serine--pyruvate aminotransferase (EC 2.6.1.51) No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) mRNA_7913 16281
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) mRNA_3609 11977
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) mRNA_7776 16144
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) mRNA_7599 15967
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) mRNA_4722 13090
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein No genes
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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