Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1692

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10060 and 10061 are separated by 259 nucleotides mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908,144 to 911,524 10060 mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911,784 to 914,454 10061

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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907,279 + +0.4
907,439 + +3.4
907,724 + +0.2
907,743 - -0.2
907,886 + -0.3
908,047 - +0.6
908,054 + -0.5
908,328 - +0.2
908,586 - 10060 mRNA_1692 0.13 +0.2
908,645 + 10060 mRNA_1692 0.15 +1.4
908,906 + 10060 mRNA_1692 0.23 +0.3
908,944 + 10060 mRNA_1692 0.24 +0.9
909,024 - 10060 mRNA_1692 0.26 +2.9
909,218 - 10060 mRNA_1692 0.32 +0.9
909,222 + 10060 mRNA_1692 0.32 +0.1
909,376 + 10060 mRNA_1692 0.36 +0.8
909,807 + 10060 mRNA_1692 0.49 -0.2
909,964 - 10060 mRNA_1692 0.54 +0.6
910,243 - 10060 mRNA_1692 0.62 +1.2
910,353 + 10060 mRNA_1692 0.65 +1.1
910,368 + 10060 mRNA_1692 0.66 +0.3
910,478 + 10060 mRNA_1692 0.69 +0.1
910,516 + 10060 mRNA_1692 0.70 +0.4
910,700 - 10060 mRNA_1692 0.76 +0.9
911,151 - 10060 mRNA_1692 0.89 +0.5
911,463 + -0.8
911,592 - +0.3
911,622 + +0.2
911,635 - +0.5
911,773 + +0.4
911,777 + +0.2
911,933 - +0.6
911,999 - +0.8
912,026 - +0.2
912,307 + 10061 mRNA_1693 0.20 +1.6
912,451 - 10061 mRNA_1693 0.25 -0.4

Or see this region's nucleotide sequence