Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1766

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10134 and 10135 are separated by 364 nucleotides mRNA_1766: 10134 - K03097 CSNK2A casein kinase II subunit alpha, at 151,982 to 154,408 10134 mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154,773 to 156,142 10135

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
151,019 - +0.6
151,027 - +1.1
151,035 + -0.9
151,129 + +0.9
151,146 + +0.4
151,157 + +2.1
151,163 + +0.8
151,168 + +0.2
151,545 + +0.2
151,566 + +3.6
151,566 - -2.9
151,595 + +1.3
151,748 + -0.5
151,749 - +1.6
151,896 + +0.8
151,907 + -0.4
151,912 + +1.3
152,169 - +1.2
152,183 - +0.3
152,200 + +0.9
152,767 + 10134 mRNA_1766 0.32 +0.1
152,782 - 10134 mRNA_1766 0.33 +0.6
153,058 - 10134 mRNA_1766 0.44 +1.8
153,247 - 10134 mRNA_1766 0.52 +0.7
153,254 + 10134 mRNA_1766 0.52 +1.1
153,351 + 10134 mRNA_1766 0.56 +0.5
153,649 - 10134 mRNA_1766 0.69 +2.2
153,823 + 10134 mRNA_1766 0.76 -0.8
153,876 + 10134 mRNA_1766 0.78 +0.8
153,942 + 10134 mRNA_1766 0.81 -0.8
154,279 - +0.4
154,316 + +0.8
154,510 + +0.7
154,553 - -0.4
154,553 - +0.4
154,553 - +0.2
154,634 + -0.3
154,640 + -0.1
154,676 - -0.1
154,984 - 10135 mRNA_1767 0.15 -0.0
155,128 - 10135 mRNA_1767 0.26 +0.3

Or see this region's nucleotide sequence