Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1801

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10168 and 10169 are separated by 137 nucleotides10169 and 10170 are separated by 74 nucleotides mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229,665 to 231,047 10168 mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231,185 to 232,547 10169 mRNA_1802: 10170 - K05546 GANAB alpha 1,3-glucosidase, at 232,622 to 238,014 10170

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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230,215 + 10168 mRNA_1800 0.40 +0.1
230,335 + 10168 mRNA_1800 0.48 +0.2
230,398 - 10168 mRNA_1800 0.53 +0.4
230,489 + 10168 mRNA_1800 0.60 +0.5
230,489 + 10168 mRNA_1800 0.60 +1.2
230,941 + -0.3
231,134 - -0.2
231,148 + +0.3
231,148 + +0.3
231,154 + +1.1
231,163 + +0.2
231,185 - +1.4
232,772 - +0.4
232,802 - +0.1
232,814 + -0.4
233,400 - 10170 mRNA_1802 0.14 +0.4
233,489 - 10170 mRNA_1802 0.16 +0.3
233,511 + 10170 mRNA_1802 0.16 -2.4

Or see this region's nucleotide sequence