Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1809

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10176 and 10177 are separated by 777 nucleotides10177 and 10178 are separated by 457 nucleotides mRNA_1808: 10176 - Hypothetical Protein, at 257,395 to 258,066 10176 mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797 10177 mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213 10178

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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257,971 - 10176 mRNA_1808 0.86 -1.1
257,981 - 10176 mRNA_1808 0.87 +0.3
257,986 + 10176 mRNA_1808 0.88 +0.1
258,079 + +0.9
258,173 - +0.8
258,200 - +0.6
258,204 + +0.7
258,204 - +0.1
258,229 - +0.1
258,229 + -0.2
258,234 - +0.3
258,262 + +0.6
258,276 - -0.2
258,290 - +0.5
258,325 + +0.6
258,348 + -2.8
258,454 + +0.7
258,526 + +4.0
258,558 + +0.4
258,623 + +1.2
258,625 - +0.5
258,645 - -0.2
258,653 + +1.2
258,675 + +1.7
258,680 - -0.2
258,700 + +1.1
258,727 + +0.6
258,731 + +0.9
258,732 - -2.9
258,734 - -1.0
258,735 + +0.4
258,739 + +0.5
258,740 + +1.4
258,763 + +0.2
258,770 + +2.4
258,773 + +0.4
258,795 - +0.4
258,808 + -0.5
258,808 + +0.3
259,522 + 10177 mRNA_1809 0.71 -1.6
260,103 + +0.1
260,425 + 10178 mRNA_1810 0.18 +1.0

Or see this region's nucleotide sequence