Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1956

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10324 and 10325 are separated by 366 nucleotides mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606,971 to 607,614 10324 mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607,981 to 609,583 10325

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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606,122 + +0.3
606,243 - +1.3
606,372 + -0.1
606,388 - -1.7
606,407 + -1.3
606,410 + +0.1
606,541 + -0.2
606,542 + +1.7
606,542 - +1.5
606,551 - -0.6
606,594 + +0.5
606,680 - +0.7
606,704 - +0.1
606,710 + +2.0
606,996 - +0.5
607,303 + 10324 mRNA_1956 0.52 +0.8
607,305 + 10324 mRNA_1956 0.52 -0.1
607,373 - 10324 mRNA_1956 0.62 -1.1
607,470 - 10324 mRNA_1956 0.77 -0.7
607,473 + 10324 mRNA_1956 0.78 +0.6
607,616 - +0.0
607,686 + +0.5
607,773 - -0.0
607,789 - +0.6
607,790 - +1.3
607,884 - -0.0
607,903 - -0.6
607,905 - -0.4
607,907 - +0.7

Or see this region's nucleotide sequence