Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2049

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10416 and 10417 are separated by 710 nucleotides10417 and 10418 are separated by 698 nucleotides mRNA_2048: 10416 - Hypothetical Protein, at 831,282 to 832,133 10416 mRNA_2049: 10417 - K07565 NIP7 60S ribosome subunit biogenesis protein NIP7, at 832,844 to 834,374 10417 mRNA_2050: 10418 - K02725 PSMA1 20S proteasome subunit alpha 6, at 835,073 to 836,370 10418

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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832,078 + +1.3
832,081 - -1.1
832,216 - +1.1
832,220 - -0.2
832,661 - +0.0
832,845 - +0.1
833,710 + 10417 mRNA_2049 0.57 +0.3
834,435 + +0.6
834,438 + +0.5
834,556 - +1.3
834,579 - +1.3
834,582 + +0.7
834,583 + -0.5
834,588 + +1.1
834,697 - -0.4
834,706 - +0.9
834,713 - +2.2
834,726 + +0.9
834,730 + +0.4

Or see this region's nucleotide sequence