Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2065

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10432 and 10433 are separated by 404 nucleotides10433 and 10434 are separated by 196 nucleotides mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863,719 to 865,833 10432 mRNA_2065: 10433 - Hypothetical Protein, at 866,238 to 867,408 10433 mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867,605 to 868,583 10434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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865,284 + 10432 mRNA_2064 0.74 -0.2
865,304 - 10432 mRNA_2064 0.75 -0.3
865,360 + 10432 mRNA_2064 0.78 +0.7
865,451 - 10432 mRNA_2064 0.82 +0.3
865,540 - 10432 mRNA_2064 0.86 -0.1
865,547 - 10432 mRNA_2064 0.86 +2.2
865,563 + 10432 mRNA_2064 0.87 -0.7
865,706 + +1.0
865,714 - +1.0
865,981 - +1.3
865,998 + -0.6
866,001 - +0.7
866,019 - -0.1
866,024 + +0.5
866,141 - -0.1
866,147 - +0.4
866,174 - -1.5
866,175 - -0.2
866,416 + 10433 mRNA_2065 0.15 +1.5
866,426 + 10433 mRNA_2065 0.16 -0.9
866,455 - 10433 mRNA_2065 0.19 -0.8
866,456 + 10433 mRNA_2065 0.19 +0.8
866,465 - 10433 mRNA_2065 0.19 +0.9
866,465 - 10433 mRNA_2065 0.19 -0.6
866,517 - 10433 mRNA_2065 0.24 +0.9
866,697 - 10433 mRNA_2065 0.39 -0.8
866,716 - 10433 mRNA_2065 0.41 +1.5
866,868 - 10433 mRNA_2065 0.54 +1.9
866,876 - 10433 mRNA_2065 0.54 +1.2
867,206 - 10433 mRNA_2065 0.83 +0.3
867,288 - 10433 mRNA_2065 0.90 +1.1
867,319 - -0.4
867,385 + +0.1
867,431 - +0.3
867,466 - +0.9
867,479 - +0.1
867,486 + -1.1
867,486 + +0.0
867,488 - -0.7
867,574 - +2.6
867,583 - +1.8
867,596 - +3.1
867,619 + +0.2
867,639 - +1.2
867,944 - 10434 mRNA_2066 0.35 -0.5
867,948 + 10434 mRNA_2066 0.35 -0.5
867,991 - 10434 mRNA_2066 0.39 -2.0
868,059 - 10434 mRNA_2066 0.46 -1.0
868,066 + 10434 mRNA_2066 0.47 -0.7
868,214 + 10434 mRNA_2066 0.62 +0.1
868,253 - 10434 mRNA_2066 0.66 -0.9
868,298 - 10434 mRNA_2066 0.71 +0.8
868,342 - 10434 mRNA_2066 0.75 +2.0
868,390 - 10434 mRNA_2066 0.80 -1.1

Or see this region's nucleotide sequence