Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2069

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10437 and 10438 are separated by 260 nucleotides mRNA_2069: 10437 - K03039 PSMD13, RPN9 26S proteasome regulatory subunit N9, at 1,235 to 2,339 10437 mRNA_2070: 10438 - Hypothetical Protein, at 2,600 to 2,887 10438

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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337 + +1.2
2,482 + +2.0
2,499 - +2.1
2,500 + +0.3
2,502 + +1.0
2,508 + +2.6
2,512 - -1.4
2,513 + +0.4
2,514 - +0.4
2,521 - -0.1
2,522 + -0.5
2,523 - +0.6
2,523 - +0.7
2,638 - 10438 mRNA_2070 0.13 -0.9
2,667 + 10438 mRNA_2070 0.23 +0.1
2,670 - 10438 mRNA_2070 0.24 -1.1
2,763 - 10438 mRNA_2070 0.57 +2.5
2,780 - 10438 mRNA_2070 0.62 -0.1
2,798 - 10438 mRNA_2070 0.69 +0.3
2,805 - 10438 mRNA_2070 0.71 -0.3
2,811 + 10438 mRNA_2070 0.73 +1.6
3,039 - +1.3
3,248 + +0.8
3,318 - +0.9

Or see this region's nucleotide sequence