Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2076

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10443 and 10444 are separated by 491 nucleotides10444 and 10445 are separated by 360 nucleotides mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13,225 to 14,495 10443 mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14,987 to 18,739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19,100 to 20,228 10445

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
14,030 - 10443 mRNA_2075 0.63 -0.0
14,320 - 10443 mRNA_2075 0.86 +0.5
14,332 + 10443 mRNA_2075 0.87 +0.7
14,454 - -0.3
14,626 - +0.7
14,757 - +0.9
14,811 - -0.1
14,867 + +0.2
15,085 + +1.8
15,241 + +0.8
15,370 - 10444 mRNA_2076 0.10 -1.3
15,435 - 10444 mRNA_2076 0.12 -1.0
15,498 - 10444 mRNA_2076 0.14 -0.2
15,501 - 10444 mRNA_2076 0.14 -0.3
15,657 + 10444 mRNA_2076 0.18 -0.0
15,720 - 10444 mRNA_2076 0.20 +0.7
15,823 + 10444 mRNA_2076 0.22 +0.0
15,936 - 10444 mRNA_2076 0.25 +0.8
15,960 + 10444 mRNA_2076 0.26 -1.7
15,991 - 10444 mRNA_2076 0.27 -0.5
16,098 + 10444 mRNA_2076 0.30 +0.4
16,124 - 10444 mRNA_2076 0.30 -0.8
16,137 - 10444 mRNA_2076 0.31 +0.4
16,257 + 10444 mRNA_2076 0.34 +0.8
16,265 + 10444 mRNA_2076 0.34 -1.1
16,389 - 10444 mRNA_2076 0.37 +1.4
16,832 + 10444 mRNA_2076 0.49 -0.2
17,032 + 10444 mRNA_2076 0.54 -0.1
17,078 - 10444 mRNA_2076 0.56 +1.1
17,214 + 10444 mRNA_2076 0.59 -0.1
17,248 - 10444 mRNA_2076 0.60 +0.2
17,451 + 10444 mRNA_2076 0.66 -0.4
17,453 - 10444 mRNA_2076 0.66 -1.1
17,588 + 10444 mRNA_2076 0.69 -0.5
17,738 + 10444 mRNA_2076 0.73 -0.1
17,760 - 10444 mRNA_2076 0.74 -0.4
17,808 + 10444 mRNA_2076 0.75 +1.4
17,870 + 10444 mRNA_2076 0.77 +0.9
17,981 - 10444 mRNA_2076 0.80 -0.1
18,033 + 10444 mRNA_2076 0.81 +0.7
18,192 - 10444 mRNA_2076 0.85 +0.9
18,548 + -0.0
18,639 + -0.4
18,742 - +0.3
18,860 + +0.7
18,863 - +1.7
18,878 - +1.8
19,094 + +0.3
19,127 - -0.7
19,187 - +0.2
19,313 - 10445 mRNA_2077 0.19 +0.5
19,326 - 10445 mRNA_2077 0.20 +0.1
19,482 - 10445 mRNA_2077 0.34 +0.2
19,649 - 10445 mRNA_2077 0.49 +1.4
19,663 + 10445 mRNA_2077 0.50 -0.0
19,676 - 10445 mRNA_2077 0.51 +1.3

Or see this region's nucleotide sequence