Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10451 and 10452 are separated by 519 nucleotides mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30,266 to 34,170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34,690 to 37,198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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33,816 + +2.0
33,833 + +1.9
33,961 + -0.1
33,964 - +0.9
33,973 + +0.5
34,091 - -0.2
34,118 + +0.5
34,215 - -0.8
34,266 - +0.6
34,369 + +2.6
34,692 - +0.4
34,980 + 10452 mRNA_2084 0.12 +0.5
35,015 + 10452 mRNA_2084 0.13 -1.5
35,019 - 10452 mRNA_2084 0.13 +0.3
35,150 + 10452 mRNA_2084 0.18 +0.4
35,258 - 10452 mRNA_2084 0.23 +1.2
35,390 - 10452 mRNA_2084 0.28 -0.6
35,754 + 10452 mRNA_2084 0.42 +0.2
35,973 - 10452 mRNA_2084 0.51 +0.6
35,991 + 10452 mRNA_2084 0.52 -0.8
35,991 + 10452 mRNA_2084 0.52 -0.2
36,011 - 10452 mRNA_2084 0.53 +1.3
36,042 + 10452 mRNA_2084 0.54 +0.8
36,149 + 10452 mRNA_2084 0.58 +0.8
36,182 + 10452 mRNA_2084 0.59 -1.5
36,326 + 10452 mRNA_2084 0.65 +0.8
36,373 + 10452 mRNA_2084 0.67 -0.9
36,410 + 10452 mRNA_2084 0.69 +1.2
36,456 - 10452 mRNA_2084 0.70 -0.4
36,559 + 10452 mRNA_2084 0.74 +0.7
37,025 - +3.5
37,197 - +1.3
37,481 - +0.1
37,483 + +0.1
37,492 - -0.3
37,496 + +0.2
37,513 - -0.1
37,569 + +0.3
37,615 + -0.6
37,615 - -2.1
37,631 + +0.1
37,635 - -1.1
37,638 + +1.8
37,639 + +0.2
37,640 - +1.4
37,644 + -0.9
37,830 - -0.0
37,837 + +1.6
37,846 + +1.9
37,923 + -0.4
37,940 + +1.9
37,940 - -0.1
38,103 - -0.3

Or see this region's nucleotide sequence