Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2227

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10594 and 10595 are separated by 123 nucleotides10595 and 10596 are separated by 131 nucleotides mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405,486 to 409,218 10594 mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409,342 to 412,255 10595 mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412,387 to 413,949 10596

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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409,228 - +0.0
409,239 + -0.6
409,361 - +0.1
409,364 - -0.3
409,897 + 10595 mRNA_2227 0.19 -0.7
409,919 + 10595 mRNA_2227 0.20 -0.4
410,931 - 10595 mRNA_2227 0.55 +0.2
412,306 - -0.4
412,309 + +0.1
412,315 + -1.0
412,319 + -1.6
412,335 + -0.3
412,353 - +0.7

Or see this region's nucleotide sequence