Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2271

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10638 and 10639 overlap by 2 nucleotides10639 and 10640 are separated by 461 nucleotides mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492,259 to 494,809 10638 mRNA_2271: 10639 - Hypothetical Protein, at 494,808 to 495,275 10639 mRNA_2272: 10640 - Hypothetical Protein, at 495,737 to 495,928 10640

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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493,824 - 10638 mRNA_2270 0.61 +0.4
493,965 + 10638 mRNA_2270 0.67 +2.0
493,981 - 10638 mRNA_2270 0.68 +0.9
494,113 + 10638 mRNA_2270 0.73 +2.0
494,375 - 10638 mRNA_2270 0.83 +1.3
494,381 - 10638 mRNA_2270 0.83 +1.5
494,435 - 10638 mRNA_2270 0.85 +0.7
494,456 + 10638 mRNA_2270 0.86 +1.7
494,549 - 10638 mRNA_2270 0.90 +2.2
494,698 - +1.5
494,708 + +2.0
494,713 + +2.0
494,848 + +0.9
494,855 - 10639 mRNA_2271 0.10 +1.7
494,855 - 10639 mRNA_2271 0.10 -1.2
494,857 + 10639 mRNA_2271 0.10 +0.6
494,858 + 10639 mRNA_2271 0.11 +0.7
494,880 - 10639 mRNA_2271 0.15 -0.2
494,906 - 10639 mRNA_2271 0.21 +1.0
494,986 + 10639 mRNA_2271 0.38 +0.2
495,001 + 10639 mRNA_2271 0.41 -0.4
495,006 + 10639 mRNA_2271 0.42 -0.3
495,007 - 10639 mRNA_2271 0.43 +0.2
495,033 - 10639 mRNA_2271 0.48 +0.3
495,044 + 10639 mRNA_2271 0.50 +0.8
495,155 - 10639 mRNA_2271 0.74 -0.1
495,160 - 10639 mRNA_2271 0.75 +1.3
496,054 - +1.8
496,056 - +1.0

Or see this region's nucleotide sequence