Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2311

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10678 and 10679 are separated by 737 nucleotides10679 and 10680 are separated by 389 nucleotides mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577,390 to 579,273 10678 mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580,011 to 582,871 10679 mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583,261 to 584,055 10680

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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579,048 - 10678 mRNA_2310 0.88 -0.5
579,153 - +2.5
579,153 + -0.4
579,280 - +0.3
579,283 + -0.7
579,304 - +1.3
579,306 - +0.2
579,310 + +1.0
579,314 + -1.4
579,319 - +0.1
579,327 - +1.7
579,333 - +0.8
579,338 - +0.4
579,343 - -0.0
579,349 + +0.7
579,355 + +1.6
579,363 + -0.8
579,428 + +0.8
579,437 + +0.2
579,440 - -0.3
579,485 + +0.8
579,486 + -0.3
579,486 - -0.6
579,495 - +0.8
579,512 + -1.6
579,531 + +1.0
579,566 + +1.3
579,650 + +0.5
579,656 - -1.0
579,660 - +0.5
579,661 - +0.3
579,667 + +1.7
579,668 + -0.7
579,690 - +1.6
579,699 - +1.3
579,700 - +0.8
579,705 + -1.0
579,707 - +0.5
579,708 - +0.7
579,708 + +0.1
579,709 + +1.3
579,713 - +0.8
579,714 - +0.1
579,714 + -0.2
579,715 - +1.9
579,724 - +0.8
579,797 - +0.3
579,867 - +2.0
580,896 - 10679 mRNA_2311 0.31 -0.7
580,900 + 10679 mRNA_2311 0.31 +0.1
581,206 + 10679 mRNA_2311 0.42 -2.8
582,487 + 10679 mRNA_2311 0.87 -1.5
582,620 - +1.1
582,789 - +1.2
582,874 + -0.6
582,918 - +0.4
582,925 - -2.8
582,928 + +0.0
582,954 + -0.5
582,954 + +0.1
583,096 - +0.9
583,115 + -1.2
583,118 - +0.3

Or see this region's nucleotide sequence