Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2354

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10721 and 10722 are separated by 132 nucleotides10722 and 10723 are separated by 67 nucleotides mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124 10721 mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787 10722 mRNA_2355: 10723 - Hypothetical Protein, at 694,855 to 695,610 10723

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
691,276 + 10721 mRNA_2353 0.61 +0.6
691,690 - 10721 mRNA_2353 0.80 -0.1
691,701 + 10721 mRNA_2353 0.80 -0.2
691,842 - 10721 mRNA_2353 0.87 -0.6
691,961 + +0.4
691,997 - +0.6
692,138 + +1.3
692,142 - +1.3
692,257 - +1.2
692,258 - +0.1
692,260 - -1.1
692,302 + +0.5
692,306 + -0.3
692,311 + -0.6
692,320 + +0.7
692,320 - -0.2
692,334 + -0.9
692,461 + +0.8
692,463 + -0.2
692,463 + +2.5
692,469 - +0.1
692,483 - +0.9
692,493 - +0.8
692,500 + +0.7
692,772 - 10722 mRNA_2354 0.20 +1.6
693,084 + 10722 mRNA_2354 0.33 -0.7
693,322 - 10722 mRNA_2354 0.42 +2.2
693,327 + 10722 mRNA_2354 0.42 +1.7
693,335 - 10722 mRNA_2354 0.43 +1.1
693,922 - 10722 mRNA_2354 0.66 -1.9
694,058 - 10722 mRNA_2354 0.71 +0.2
694,223 - 10722 mRNA_2354 0.78 -0.0
694,326 + 10722 mRNA_2354 0.82 +0.5
694,345 - 10722 mRNA_2354 0.82 +0.2
695,221 - 10723 mRNA_2355 0.48 -0.0
695,657 - +1.1

Or see this region's nucleotide sequence