Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2428

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10795 and 10796 are separated by 64 nucleotides10796 and 10797 are separated by 231 nucleotides mRNA_2427: 10795 - Hypothetical Protein, at 96,248 to 96,907 10795 mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96,972 to 102,025 10796 mRNA_2429: 10797 - K03347 CUL1, CDC53 cullin 1, at 102,257 to 105,935 10797

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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96,107 + -1.0
96,148 - +0.1
96,152 - +0.4
96,247 - +2.0
96,267 - -0.1
96,272 + -0.9
96,278 + +0.2
96,280 - -0.8
96,286 - +1.4
96,299 - -0.7
96,308 - -1.0
96,317 - 10795 mRNA_2427 0.10 -0.5
96,328 + 10795 mRNA_2427 0.12 -1.0
96,412 + 10795 mRNA_2427 0.25 +0.1
96,423 - 10795 mRNA_2427 0.27 -0.5
96,453 + 10795 mRNA_2427 0.31 +0.3
96,513 - 10795 mRNA_2427 0.40 -0.1
96,535 + 10795 mRNA_2427 0.43 -1.0
96,543 - 10795 mRNA_2427 0.45 +1.5
96,547 - 10795 mRNA_2427 0.45 -0.9
96,548 + 10795 mRNA_2427 0.45 +0.4
96,566 + 10795 mRNA_2427 0.48 -0.0
96,575 + 10795 mRNA_2427 0.50 +0.4
96,583 - 10795 mRNA_2427 0.51 +0.1
96,583 + 10795 mRNA_2427 0.51 +0.1
96,584 + 10795 mRNA_2427 0.51 -0.7
96,586 + 10795 mRNA_2427 0.51 -0.8
96,634 + 10795 mRNA_2427 0.58 +0.1
96,691 - 10795 mRNA_2427 0.67 -1.3
96,705 + 10795 mRNA_2427 0.69 +0.4
96,709 + 10795 mRNA_2427 0.70 +0.5
96,809 + 10795 mRNA_2427 0.85 -0.4
96,855 - -1.1
96,859 + +0.4
96,861 + -1.6
96,874 + +0.5
97,057 + -1.2
97,128 + -0.6
97,276 - +3.4
97,621 + 10796 mRNA_2428 0.13 -1.2
97,711 + 10796 mRNA_2428 0.15 +0.2
97,769 - 10796 mRNA_2428 0.16 +1.6
97,770 + 10796 mRNA_2428 0.16 -0.4
97,849 - 10796 mRNA_2428 0.17 +0.4
98,184 - 10796 mRNA_2428 0.24 +0.6
98,609 + 10796 mRNA_2428 0.32 +0.9
98,897 - 10796 mRNA_2428 0.38 +0.4
98,942 - 10796 mRNA_2428 0.39 +1.0
99,059 - 10796 mRNA_2428 0.41 +0.0
99,094 - 10796 mRNA_2428 0.42 +2.3
99,369 + 10796 mRNA_2428 0.47 -0.7
99,497 - 10796 mRNA_2428 0.50 -0.1
99,679 - 10796 mRNA_2428 0.54 -0.1
100,375 + 10796 mRNA_2428 0.67 +0.2
100,704 - 10796 mRNA_2428 0.74 +0.3
100,777 - 10796 mRNA_2428 0.75 +1.4
101,366 + 10796 mRNA_2428 0.87 +0.7
101,387 - 10796 mRNA_2428 0.87 +1.2
101,397 - 10796 mRNA_2428 0.88 +0.8
101,517 - 10796 mRNA_2428 0.90 +1.0
101,543 + +0.1
101,546 - -0.6
101,675 + -0.2
101,683 + +0.1
101,849 + +0.3
101,914 + -1.2
101,963 + -1.2
101,990 - +0.7
102,217 + -0.2
102,251 - -2.0

Or see this region's nucleotide sequence