Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2438

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10806 and 10807 are separated by 213 nucleotides mRNA_2438: 10806 - HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224, at 131,945 to 132,522 10806 mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822 10807

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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130,946 + -0.2
130,948 - -0.7
130,986 - +0.7
131,063 - +0.2
131,067 + +2.0
131,067 - +0.9
131,069 - -0.3
131,153 + +0.1
131,158 - +0.3
131,169 - -0.4
131,183 - -0.1
131,196 - -0.7
131,205 - -0.3
131,206 - +0.0
131,207 + +1.5
131,230 + +0.4
131,233 + -0.8
131,239 + -1.6
131,252 + +0.8
131,263 - -0.7
131,264 + +1.3
131,271 - +0.6
131,286 - -0.4
131,374 - -0.7
131,390 - +1.9
131,405 + +0.2
131,825 + +1.2
132,276 + 10806 mRNA_2438 0.57 +0.4
132,540 - +1.3
132,544 - +1.8
132,547 - +1.7
132,548 + -0.8
132,566 + +0.1
132,573 - -0.9
132,573 + +0.5
132,575 + -0.3
132,713 - +2.0
132,728 + +1.3
132,730 + -2.2
132,731 + -0.1

Or see this region's nucleotide sequence