Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2439

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10806 and 10807 are separated by 213 nucleotides10807 and 10808 are separated by 420 nucleotides mRNA_2438: 10806 - HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224, at 131,945 to 132,522 10806 mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822 10807 mRNA_2440: 10808 - Hypothetical Protein, at 134,243 to 137,592 10808

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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131,825 + +1.2
132,276 + 10806 mRNA_2438 0.57 +0.4
132,540 - +1.3
132,544 - +1.8
132,547 - +1.7
132,548 + -0.8
132,566 + +0.1
132,573 - -0.9
132,573 + +0.5
132,575 + -0.3
132,713 - +2.0
132,728 + +1.3
132,730 + -2.2
132,731 + -0.1
133,604 + 10807 mRNA_2439 0.80 -0.6
134,606 + 10808 mRNA_2440 0.11 +0.1
134,643 + 10808 mRNA_2440 0.12 +1.4
134,780 + 10808 mRNA_2440 0.16 +1.9

Or see this region's nucleotide sequence