Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2466

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10833 and 10834 are separated by 450 nucleotides mRNA_2465: 10833 - K09291 TPR, MLP1, MLP2 nucleoprotein TPR, at 206,394 to 209,572 10833 mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249 10834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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209,625 + -0.7
209,626 - +0.4
209,634 - -0.0
209,646 - +0.4
209,654 + -0.2
209,655 - -0.7
209,696 - +0.1
209,697 + +0.6
209,734 + +0.1
210,049 + +2.1
210,106 - +1.4
210,146 + +1.4
210,257 - +1.0
210,373 - -0.8
210,407 + +0.2
210,417 + +0.7
210,554 - 10834 mRNA_2466 0.10 -0.5
210,578 + 10834 mRNA_2466 0.11 +0.5
210,670 + 10834 mRNA_2466 0.12 -0.1
211,024 - 10834 mRNA_2466 0.19 +0.7
211,168 - 10834 mRNA_2466 0.22 +1.9
211,252 + 10834 mRNA_2466 0.24 +0.3
211,425 + 10834 mRNA_2466 0.27 +3.2
211,478 - 10834 mRNA_2466 0.28 +0.2
211,696 + 10834 mRNA_2466 0.32 +1.7
212,009 + 10834 mRNA_2466 0.38 +1.5
212,146 - 10834 mRNA_2466 0.41 +0.6
212,195 + 10834 mRNA_2466 0.42 +1.4
212,229 - 10834 mRNA_2466 0.42 +2.3
212,539 - 10834 mRNA_2466 0.48 +0.8
212,620 + 10834 mRNA_2466 0.50 +0.5
212,843 - 10834 mRNA_2466 0.54 -1.5
212,857 + 10834 mRNA_2466 0.54 -1.2
212,910 - 10834 mRNA_2466 0.55 -2.4
212,911 + 10834 mRNA_2466 0.55 -0.1
212,912 - 10834 mRNA_2466 0.55 -0.5
212,913 - 10834 mRNA_2466 0.55 -0.5
213,019 + 10834 mRNA_2466 0.57 +0.3
213,074 + 10834 mRNA_2466 0.58 +0.5
213,482 + 10834 mRNA_2466 0.66 +0.4
213,484 + 10834 mRNA_2466 0.66 -0.3
213,648 + 10834 mRNA_2466 0.69 +0.8
213,899 + 10834 mRNA_2466 0.74 +0.1
214,195 + 10834 mRNA_2466 0.80 +1.0
214,334 + 10834 mRNA_2466 0.82 +0.5
214,479 + 10834 mRNA_2466 0.85 -0.2
214,496 - 10834 mRNA_2466 0.86 +2.3
214,896 + +1.2
214,913 + -0.5
215,195 - -0.8
215,204 - +0.1
215,220 + +0.2
215,223 + +2.1
215,245 - +0.5
215,260 + +2.2
215,348 - -0.6
215,375 + -1.7
215,507 - +0.5
215,511 - +1.1
215,542 - +1.6
215,638 - +1.3
215,662 + -0.4
215,668 - +0.7
216,081 + +0.1
216,117 - +0.9
216,141 - +0.0
216,168 + +2.2

Or see this region's nucleotide sequence