Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2472

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10839 and 10840 are separated by 513 nucleotides10840 and 10841 are separated by 469 nucleotides mRNA_2471: 10839 - K13104 ZNF830, CCDC16 zinc finger protein 830, at 227,199 to 228,171 10839 mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228,685 to 229,666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230,136 to 233,558 10841

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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228,073 + 10839 mRNA_2471 0.90 +2.4
228,073 - 10839 mRNA_2471 0.90 +0.2
228,088 - +1.0
228,170 - +0.4
228,217 - -0.6
228,218 + +2.6
228,335 - +0.6
228,346 - -0.8
228,348 - -0.6
228,360 + +1.6
228,367 + -1.2
228,372 + -0.6
228,464 - +0.4
228,466 + +0.1
228,523 - +0.5
228,644 - +0.1
228,757 - -0.3
229,652 - +0.0
229,657 + +1.1
229,804 + -0.3
230,109 + +0.5
230,544 + 10841 mRNA_2473 0.12 +0.4

Or see this region's nucleotide sequence