Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2486

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10853 and 10854 are separated by 391 nucleotides10854 and 10855 are separated by 525 nucleotides mRNA_2485: 10853 - K07760 CDK cyclin-dependent kinase, at 261,080 to 262,482 10853 mRNA_2486: 10854 - KOG3134 Predicted membrane protein, at 262,874 to 263,661 10854 mRNA_2487: 10855 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 264,187 to 266,262 10855

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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262,677 + +1.8
262,724 + +1.4
262,759 + +1.8
262,811 - +0.4
262,959 - 10854 mRNA_2486 0.11 +0.5
262,960 + 10854 mRNA_2486 0.11 -1.9
262,967 - 10854 mRNA_2486 0.12 +0.4
263,096 - 10854 mRNA_2486 0.28 +0.6
263,407 - 10854 mRNA_2486 0.68 +0.6
263,438 - 10854 mRNA_2486 0.72 +1.7
263,596 - -0.4
263,706 + +0.6
263,992 - +0.2
264,506 + 10855 mRNA_2487 0.15 +1.0
264,561 - 10855 mRNA_2487 0.18 +0.5
264,651 - 10855 mRNA_2487 0.22 +0.5

Or see this region's nucleotide sequence