Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2552

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10919 and 10920 are separated by 959 nucleotides10920 and 10921 are separated by 111 nucleotides mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426,245 to 427,122 10919 mRNA_2552: 10920 - Hypothetical Protein, at 428,082 to 428,710 10920 mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428,822 to 431,100 10921

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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427,455 + +0.4
427,482 - -3.0
427,493 - +1.0
427,494 - -0.6
427,507 + +0.4
427,516 - +0.8
427,625 - +0.8
427,744 - +0.3
427,756 - -0.0
427,756 - -1.9
427,761 + -0.2
427,779 - +0.1
427,783 - -2.2
427,795 + +0.2
428,026 + +1.2
428,040 + -0.9
428,086 + -0.5
428,105 - -0.0
428,121 - +2.6
428,237 - 10920 mRNA_2552 0.25 -1.2
428,265 + 10920 mRNA_2552 0.29 -1.3
428,265 - 10920 mRNA_2552 0.29 +1.0
428,384 - 10920 mRNA_2552 0.48 +0.4
428,437 + 10920 mRNA_2552 0.56 -0.3
428,553 + 10920 mRNA_2552 0.75 -0.2
428,567 + 10920 mRNA_2552 0.77 -0.8
428,821 + -2.7
429,016 - +1.1
429,264 - 10921 mRNA_2553 0.19 -0.3
429,270 - 10921 mRNA_2553 0.20 +0.9
429,319 - 10921 mRNA_2553 0.22 +0.3
429,520 - 10921 mRNA_2553 0.31 -0.5
429,577 - 10921 mRNA_2553 0.33 -0.9

Or see this region's nucleotide sequence