Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2555

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10922 and 10923 are separated by 102 nucleotides10923 and 10924 are separated by 276 nucleotides mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431,704 to 432,671 10922 mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316 10923 mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275 10924

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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431,777 - -1.3
432,238 + 10922 mRNA_2554 0.55 +0.0
432,322 + 10922 mRNA_2554 0.64 -0.7
432,342 + 10922 mRNA_2554 0.66 +1.1
432,351 - 10922 mRNA_2554 0.67 -0.2
432,357 + 10922 mRNA_2554 0.67 -0.5
432,403 - 10922 mRNA_2554 0.72 -0.6
432,588 - +1.0
435,486 + +1.3
435,615 + +1.7
435,647 + +2.0
435,753 + +3.3
435,753 + -0.4
435,755 + +0.0
435,756 + +2.1
435,761 - +1.2
435,851 - 10924 mRNA_2556 0.15 +0.5
435,879 + 10924 mRNA_2556 0.17 -0.7
435,909 - 10924 mRNA_2556 0.19 +0.3
435,918 + 10924 mRNA_2556 0.19 +2.5
436,016 + 10924 mRNA_2556 0.25 +0.4
436,042 + 10924 mRNA_2556 0.27 -0.2

Or see this region's nucleotide sequence