Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2570

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10937 and 10938 are separated by 186 nucleotides10938 and 10939 are separated by 185 nucleotides mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466,083 to 468,142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468,329 to 470,280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507 10939

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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467,620 - 10937 mRNA_2569 0.75 -0.7
467,871 + 10937 mRNA_2569 0.87 +0.7
468,063 - +0.3
468,349 + -0.7
468,356 + -1.3
468,459 - -0.1
468,636 - 10938 mRNA_2570 0.16 +0.2
468,661 + 10938 mRNA_2570 0.17 -0.7
468,924 + 10938 mRNA_2570 0.30 +3.1
469,264 - 10938 mRNA_2570 0.48 +1.0
469,383 - 10938 mRNA_2570 0.54 +0.1
469,525 - 10938 mRNA_2570 0.61 -0.3
469,755 + 10938 mRNA_2570 0.73 +1.8
469,789 - 10938 mRNA_2570 0.75 +0.2
469,806 + 10938 mRNA_2570 0.76 +0.7
469,899 - 10938 mRNA_2570 0.80 -0.5
470,059 + 10938 mRNA_2570 0.89 -0.2
470,132 - +0.6
470,136 + -0.8
470,219 - -0.5
470,230 - +0.2
470,334 - +0.3
470,364 + -0.2
470,370 - +0.1
470,378 + -0.1
470,392 + -0.0
470,414 + +0.9
470,414 + +1.2
470,454 + +0.6
470,458 + +0.6
470,473 + -0.1
471,051 - 10939 mRNA_2571 0.29 +1.1

Or see this region's nucleotide sequence